Detailed information of SNP:
|
SNP ID:
sf0216754287(Gbrowse)
Chromosome: chr02 Position: 16754287 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1387 | 80.17% | 19.83% |
| All Indica | 771 | 79.38% | 20.62% |
| All Japonica | 497 | 84.71% | 15.29% |
| Aus | 63 | 57.14% | 42.86% |
| Indica I | 353 | 72.52% | 27.48% |
| Indica II | 210 | 90.48% | 9.52% |
| Indica Intermediate | 208 | 79.81% | 20.19% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 32.98% | 67.02% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216754287 | G->A | LOC_Os02g28350(LOC_Os02g28350.1) | Synonymous |