Detailed information of SNP:
|
SNP ID:
sf0216754298(Gbrowse)
Chromosome: chr02 Position: 16754298 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1363 | 80.19% | 19.81% |
| All Indica | 744 | 64.25% | 35.75% |
| All Japonica | 496 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 354 | 75.14% | 24.86% |
| Indica II | 195 | 57.95% | 42.05% |
| Indica Intermediate | 195 | 50.77% | 49.23% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216754298 | A->G | LOC_Os02g28350(LOC_Os02g28350.1) | Non-Synonymous SNP |