Detailed information of SNP:
|
SNP ID:
sf0216757147(Gbrowse)
Chromosome: chr02 Position: 16757147 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 56.17% | 43.83% |
| All Indica | 793 | 79.70% | 20.30% |
| All Japonica | 496 | 17.14% | 82.86% |
| Aus | 66 | 56.06% | 43.94% |
| Indica I | 372 | 76.08% | 23.92% |
| Indica II | 210 | 71.43% | 28.57% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 334 | 2.40% | 97.60% |
| Tropical Japonica | 94 | 70.21% | 29.79% |
| Japonica Intermediate | 68 | 16.18% | 83.82% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216757147 | T->C | INTERGENIC | None |