Detailed information of SNP:
|
SNP ID:
sf0216757797(Gbrowse)
Chromosome: chr02 Position: 16757797 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 76.45% | 23.55% |
| All Indica | 799 | 73.47% | 26.53% |
| All Japonica | 496 | 85.48% | 14.52% |
| Aus | 67 | 46.27% | 53.73% |
| Indica I | 375 | 64.00% | 36.00% |
| Indica II | 213 | 87.32% | 12.68% |
| Indica Intermediate | 211 | 76.30% | 23.70% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 93 | 34.41% | 65.59% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216757797 | G->A | INTERGENIC | None |