Detailed information of SNP:
|
SNP ID:
sf0216758836(Gbrowse)
Chromosome: chr02 Position: 16758836 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1293 | 79.35% | 20.65% |
| All Indica | 679 | 67.01% | 32.99% |
| All Japonica | 496 | 98.99% | 1.01% |
| Aus | 65 | 70.77% | 29.23% |
| Indica I | 323 | 73.37% | 26.63% |
| Indica II | 176 | 57.39% | 42.61% |
| Indica Intermediate | 180 | 65.00% | 35.00% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 39 | 74.36% | 25.64% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216758836 | G->A | INTERGENIC | None |