Detailed information of SNP:
|
SNP ID:
sf0216761533(Gbrowse)
Chromosome: chr02 Position: 16761533 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1404 | 65.24% | 34.76% |
| All Indica | 787 | 92.63% | 7.37% |
| All Japonica | 497 | 16.30% | 83.70% |
| Aus | 65 | 95.38% | 4.62% |
| Indica I | 371 | 91.91% | 8.09% |
| Indica II | 209 | 94.26% | 5.74% |
| Indica Intermediate | 207 | 92.27% | 7.73% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 67.02% | 32.98% |
| Japonica Intermediate | 68 | 17.65% | 82.35% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216761533 | G->A | LOC_Os02g28370(LOC_Os02g28370.1) | Synonymous |