Detailed information of SNP:
|
SNP ID:
sf0216761920(Gbrowse)
Chromosome: chr02 Position: 16761920 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 68.22% | 31.78% |
| All Indica | 797 | 97.24% | 2.76% |
| All Japonica | 496 | 16.53% | 83.47% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 374 | 99.20% | 0.80% |
| Indica II | 212 | 93.87% | 6.13% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 334 | 1.50% | 98.50% |
| Tropical Japonica | 94 | 69.15% | 30.85% |
| Japonica Intermediate | 68 | 17.65% | 82.35% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216761920 | C->T | LOC_Os02g28370(LOC_Os02g28370.1) | Synonymous |