Detailed information of SNP:
|
SNP ID:
sf0216762644(Gbrowse)
Chromosome: chr02 Position: 16762644 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1403 | 74.20% | 25.80% |
| All Indica | 783 | 55.04% | 44.96% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 367 | 67.85% | 32.15% |
| Indica II | 213 | 46.01% | 53.99% |
| Indica Intermediate | 203 | 41.38% | 58.62% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216762644 | C->T | INTERGENIC | None |