Detailed information of SNP:
|
SNP ID:
sf0216764811(Gbrowse)
Chromosome: chr02 Position: 16764811 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1333 | 52.96% | 47.04% |
| All Indica | 724 | 74.31% | 25.69% |
| All Japonica | 495 | 14.55% | 85.45% |
| Aus | 61 | 91.80% | 8.20% |
| Indica I | 341 | 68.04% | 31.96% |
| Indica II | 195 | 78.46% | 21.54% |
| Indica Intermediate | 188 | 81.38% | 18.62% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 92 | 60.87% | 39.13% |
| Japonica Intermediate | 68 | 16.18% | 83.82% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 39 | 69.23% | 30.77% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216764811 | A->G | LOC_Os02g28380(LOC_Os02g28380.1) | Non-Synonymous SNP |