Detailed information of SNP:
|
SNP ID:
sf0216765397(Gbrowse)
Chromosome: chr02 Position: 16765397 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1365 | 51.06% | 48.94% |
| All Indica | 751 | 34.35% | 65.65% |
| All Japonica | 493 | 84.58% | 15.42% |
| Aus | 65 | 7.69% | 92.31% |
| Indica I | 347 | 40.06% | 59.94% |
| Indica II | 203 | 29.06% | 70.94% |
| Indica Intermediate | 201 | 29.85% | 70.15% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 92 | 34.78% | 65.22% |
| Japonica Intermediate | 66 | 84.85% | 15.15% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 38.10% | 61.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216765397 | C->T | LOC_Os02g28380(LOC_Os02g28380.1) | Non-Synonymous SNP |