Detailed information of SNP:
|
SNP ID:
sf0216766928(Gbrowse)
Chromosome: chr02 Position: 16766928 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 74.82% | 25.18% |
| All Indica | 790 | 55.95% | 44.05% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 67.56% | 32.44% |
| Indica II | 211 | 50.71% | 49.29% |
| Indica Intermediate | 206 | 40.29% | 59.71% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216766928 | C->T | LOC_Os02g28380(LOC_Os02g28380.1) | INTRON |