Detailed information of SNP:
|
SNP ID:
sf0216767506(Gbrowse)
Chromosome: chr02 Position: 16767506 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1250 | 90.24% | 9.76% |
| All Indica | 645 | 84.03% | 15.97% |
| All Japonica | 493 | 100.00% | 0.00% |
| Aus | 65 | 89.23% | 10.77% |
| Indica I | 306 | 87.91% | 12.09% |
| Indica II | 168 | 79.76% | 20.24% |
| Indica Intermediate | 171 | 81.29% | 18.71% |
| Temperate Japonica | 333 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 66 | 100.00% | 0.00% |
| Group VI/Aromatic | 11 | 45.45% | 54.55% |
| Intermediate | 36 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216767506 | C->T | LOC_Os02g28380(LOC_Os02g28380.1) | Synonymous |