Detailed information of SNP:
|
SNP ID:
sf0216767649(Gbrowse)
Chromosome: chr02 Position: 16767649 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1385 | 77.69% | 22.31% |
| All Indica | 766 | 60.57% | 39.43% |
| All Japonica | 496 | 99.19% | 0.81% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 364 | 69.78% | 30.22% |
| Indica II | 204 | 56.37% | 43.63% |
| Indica Intermediate | 198 | 47.98% | 52.02% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216767649 | G->A | INTERGENIC | None |