Detailed information of SNP:
|
SNP ID:
sf0216778899(Gbrowse)
Chromosome: chr02 Position: 16778899 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 68.29% | 31.71% |
| All Indica | 799 | 96.62% | 3.38% |
| All Japonica | 497 | 16.90% | 83.10% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 97.07% | 2.93% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 70.21% | 29.79% |
| Japonica Intermediate | 68 | 17.65% | 82.35% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216778899 | T->C | LOC_Os02g28400(LOC_Os02g28400.1) | INTRON |