Detailed information of SNP:
|
SNP ID:
sf0216783845(Gbrowse)
Chromosome: chr02 Position: 16783845 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1406 | 87.84% | 12.16% |
| All Indica | 786 | 83.33% | 16.67% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 58.21% | 41.79% |
| Indica I | 370 | 79.73% | 20.27% |
| Indica II | 205 | 77.07% | 22.93% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216783845 | C->T | LOC_Os02g28400(LOC_Os02g28400.1) | Non-Synonymous SNP |