Detailed information of SNP:
|
SNP ID:
sf0216786245(Gbrowse)
Chromosome: chr02 Position: 16786245 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1386 | 94.52% | 5.48% |
| All Indica | 770 | 93.12% | 6.88% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 71.21% | 28.79% |
| Indica I | 369 | 90.24% | 9.76% |
| Indica II | 191 | 93.72% | 6.28% |
| Indica Intermediate | 210 | 97.62% | 2.38% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 12 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216786245 | G->A | LOC_Os02g28400(LOC_Os02g28400.1) | INTRON |