Detailed information of SNP:
|
SNP ID:
sf0216793545(Gbrowse)
Chromosome: chr02 Position: 16793545 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 54.56% | 45.44% |
| All Indica | 795 | 77.36% | 22.64% |
| All Japonica | 497 | 16.70% | 83.30% |
| Aus | 67 | 55.22% | 44.78% |
| Indica I | 373 | 74.53% | 25.47% |
| Indica II | 213 | 68.08% | 31.92% |
| Indica Intermediate | 209 | 91.87% | 8.13% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 70.21% | 29.79% |
| Japonica Intermediate | 68 | 16.18% | 83.82% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216793545 | G->A | INTERGENIC | None |