Detailed information of SNP:
|
SNP ID:
sf0216794005(Gbrowse)
Chromosome: chr02 Position: 16794005 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 67.84% | 32.16% |
| All Indica | 797 | 95.98% | 4.02% |
| All Japonica | 496 | 16.73% | 83.27% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 96.79% | 3.21% |
| Indica II | 212 | 93.87% | 6.13% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 334 | 1.80% | 98.20% |
| Tropical Japonica | 94 | 70.21% | 29.79% |
| Japonica Intermediate | 68 | 16.18% | 83.82% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216794005 | A->T | INTERGENIC | None |