Detailed information of SNP:



SNP ID: sf0216799334(Gbrowse)

Chromosome: chr02

Position: 16799334
Major allele: G

Minor allele: T

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of T(minor allele)
All1417 98.80% 1.20%
All Indica799 100.00% 0.00%
All Japonica495 96.77% 3.23%
Aus67 100.00% 0.00%
Indica I375 100.00% 0.00%
Indica II213 100.00% 0.00%
Indica Intermediate211 100.00% 0.00%
Temperate Japonica333 96.10% 3.90%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 95.59% 4.41%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 97.62% 2.38%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0216799334 G->T INTERGENIC None