Detailed information of SNP:
|
SNP ID:
sf0216802276(Gbrowse)
Chromosome: chr02 Position: 16802276 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1400 | 92.36% | 7.64% |
| All Indica | 782 | 87.21% | 12.79% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 65 | 96.92% | 3.08% |
| Indica I | 362 | 78.18% | 21.82% |
| Indica II | 210 | 93.81% | 6.19% |
| Indica Intermediate | 210 | 96.19% | 3.81% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216802276 | C->G | LOC_Os02g28420(LOC_Os02g28420.1) | Non-Synonymous SNP |