Detailed information of SNP:
|
SNP ID:
sf0216815345(Gbrowse)
Chromosome: chr02 Position: 16815345 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1382 | 88.21% | 11.79% |
| All Indica | 779 | 81.26% | 18.74% |
| All Japonica | 487 | 98.97% | 1.03% |
| Aus | 61 | 95.08% | 4.92% |
| Indica I | 364 | 70.33% | 29.67% |
| Indica II | 212 | 93.87% | 6.13% |
| Indica Intermediate | 203 | 87.68% | 12.32% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 85 | 95.29% | 4.71% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216815345 | G->A | LOC_Os02g28440(LOC_Os02g28440.1) | INTRON |