Detailed information of SNP:
|
SNP ID:
sf0216822313(Gbrowse)
Chromosome: chr02 Position: 16822313 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1408 | 56.18% | 43.82% |
| All Indica | 791 | 79.52% | 20.48% |
| All Japonica | 497 | 16.70% | 83.30% |
| Aus | 67 | 59.70% | 40.30% |
| Indica I | 370 | 75.14% | 24.86% |
| Indica II | 210 | 77.14% | 22.86% |
| Indica Intermediate | 211 | 89.57% | 10.43% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 69.15% | 30.85% |
| Japonica Intermediate | 68 | 16.18% | 83.82% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 39 | 71.79% | 28.21% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216822313 | G->A | INTERGENIC | None |