Detailed information of SNP:
|
SNP ID:
sf0216828918(Gbrowse)
Chromosome: chr02 Position: 16828918 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1400 | 70.29% | 29.71% |
| All Indica | 797 | 49.06% | 50.94% |
| All Japonica | 495 | 99.39% | 0.61% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 61.87% | 38.13% |
| Indica II | 212 | 44.81% | 55.19% |
| Indica Intermediate | 210 | 30.48% | 69.52% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 66 | 98.48% | 1.52% |
| Group VI/Aromatic | 3 | 100.00% | 0.00% |
| Intermediate | 38 | 81.58% | 18.42% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216828918 | G->T | INTERGENIC | None |