Detailed information of SNP:
|
SNP ID:
sf0216844637(Gbrowse)
Chromosome: chr02 Position: 16844637 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 76.57% | 23.43% |
| All Indica | 798 | 74.19% | 25.81% |
| All Japonica | 496 | 84.88% | 15.12% |
| Aus | 67 | 44.78% | 55.22% |
| Indica I | 374 | 65.24% | 34.76% |
| Indica II | 213 | 88.73% | 11.27% |
| Indica Intermediate | 211 | 75.36% | 24.64% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 93 | 32.26% | 67.74% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216844637 | T->C | INTERGENIC | None |