Detailed information of SNP:
|
SNP ID:
sf0216845266(Gbrowse)
Chromosome: chr02 Position: 16845266 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 85.67% | 14.33% |
| All Indica | 797 | 79.67% | 20.33% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 55.22% | 44.78% |
| Indica I | 375 | 74.40% | 25.60% |
| Indica II | 211 | 73.46% | 26.54% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216845266 | C->A | INTERGENIC | None |