Detailed information of SNP:
|
SNP ID:
sf0216846123(Gbrowse)
Chromosome: chr02 Position: 16846123 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 65.82% | 34.18% |
| All Indica | 798 | 93.73% | 6.27% |
| All Japonica | 495 | 15.96% | 84.04% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 374 | 93.58% | 6.42% |
| Indica II | 213 | 92.02% | 7.98% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 333 | 1.80% | 98.20% |
| Tropical Japonica | 94 | 67.02% | 32.98% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216846123 | A->C | INTERGENIC | None |