Detailed information of SNP:
|
SNP ID:
sf0216846345(Gbrowse)
Chromosome: chr02 Position: 16846345 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1375 | 92.44% | 7.56% |
| All Indica | 764 | 89.14% | 10.86% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 61 | 77.05% | 22.95% |
| Indica I | 363 | 84.02% | 15.98% |
| Indica II | 192 | 89.06% | 10.94% |
| Indica Intermediate | 209 | 98.09% | 1.91% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 85.00% | 15.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216846345 | T->A | INTERGENIC | None |