Detailed information of SNP:
|
SNP ID:
sf0216853001(Gbrowse)
Chromosome: chr02 Position: 16853001 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 74.74% | 25.26% |
| All Indica | 798 | 73.43% | 26.57% |
| All Japonica | 496 | 84.27% | 15.73% |
| Aus | 67 | 44.78% | 55.22% |
| Indica I | 374 | 64.44% | 35.56% |
| Indica II | 213 | 87.79% | 12.21% |
| Indica Intermediate | 211 | 74.88% | 25.12% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 30.85% | 69.15% |
| Japonica Intermediate | 67 | 86.57% | 13.43% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216853001 | G->A | LOC_Os02g28500(LOC_Os02g28500.1) | INTRON |