Detailed information of SNP:
|
SNP ID:
sf0216858698(Gbrowse)
Chromosome: chr02 Position: 16858698 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1400 | 88.64% | 11.36% |
| All Indica | 786 | 83.97% | 16.03% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 64 | 60.94% | 39.06% |
| Indica I | 370 | 79.73% | 20.27% |
| Indica II | 205 | 79.51% | 20.49% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 39 | 89.74% | 10.26% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216858698 | G->A | LOC_Os02g28510(LOC_Os02g28510.1) | Non-Synonymous SNP |