Detailed information of SNP:
|
SNP ID:
sf0216859568(Gbrowse)
Chromosome: chr02 Position: 16859568 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 56.65% | 43.35% |
| All Indica | 787 | 30.62% | 69.38% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 56.72% | 43.28% |
| Indica I | 368 | 39.13% | 60.87% |
| Indica II | 212 | 17.92% | 82.08% |
| Indica Intermediate | 207 | 28.50% | 71.50% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216859568 | G->A | INTERGENIC | None |