Detailed information of SNP:
|
SNP ID:
sf0216862106(Gbrowse)
Chromosome: chr02 Position: 16862106 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1394 | 52.80% | 47.20% |
| All Indica | 780 | 71.92% | 28.08% |
| All Japonica | 495 | 15.96% | 84.04% |
| Aus | 64 | 89.06% | 10.94% |
| Indica I | 363 | 66.12% | 33.88% |
| Indica II | 212 | 82.08% | 17.92% |
| Indica Intermediate | 205 | 71.71% | 28.29% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 93 | 66.67% | 33.33% |
| Japonica Intermediate | 67 | 16.42% | 83.58% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216862106 | C->T | INTERGENIC | None |