Detailed information of SNP:
|
SNP ID:
sf0216867647(Gbrowse)
Chromosome: chr02 Position: 16867647 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1405 | 78.86% | 21.14% |
| All Indica | 787 | 78.27% | 21.73% |
| All Japonica | 496 | 84.48% | 15.52% |
| Aus | 66 | 48.48% | 51.52% |
| Indica I | 367 | 71.66% | 28.34% |
| Indica II | 211 | 89.57% | 10.43% |
| Indica Intermediate | 209 | 78.47% | 21.53% |
| Temperate Japonica | 334 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 29.79% | 70.21% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216867647 | G->A | INTERGENIC | None |