Detailed information of SNP:
|
SNP ID:
sf0216870199(Gbrowse)
Chromosome: chr02 Position: 16870199 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1368 | 81.07% | 18.93% |
| All Indica | 755 | 81.32% | 18.68% |
| All Japonica | 494 | 85.02% | 14.98% |
| Aus | 64 | 51.56% | 48.44% |
| Indica I | 343 | 74.34% | 25.66% |
| Indica II | 211 | 90.52% | 9.48% |
| Indica Intermediate | 201 | 83.58% | 16.42% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 91 | 31.87% | 68.13% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216870199 | C->T | LOC_Os02g28520(LOC_Os02g28520.1) | Non-Synonymous SNP |