Detailed information of SNP:
|
SNP ID:
sf0216870541(Gbrowse)
Chromosome: chr02 Position: 16870541 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1389 | 87.26% | 12.74% |
| All Indica | 774 | 86.69% | 13.31% |
| All Japonica | 496 | 91.13% | 8.87% |
| Aus | 65 | 63.08% | 36.92% |
| Indica I | 358 | 85.47% | 14.53% |
| Indica II | 205 | 80.49% | 19.51% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 334 | 88.92% | 11.08% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 87.50% | 12.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216870541 | G->A | LOC_Os02g28520(LOC_Os02g28520.1) | Non-Synonymous SNP |