Detailed information of SNP:
|
SNP ID:
sf0216870596(Gbrowse)
Chromosome: chr02 Position: 16870596 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1406 | 78.95% | 21.05% |
| All Indica | 786 | 77.99% | 22.01% |
| All Japonica | 497 | 84.51% | 15.49% |
| Aus | 67 | 52.24% | 47.76% |
| Indica I | 363 | 71.07% | 28.93% |
| Indica II | 213 | 86.85% | 13.15% |
| Indica Intermediate | 210 | 80.95% | 19.05% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 29.79% | 70.21% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216870596 | G->A | LOC_Os02g28520(LOC_Os02g28520.1) | SNPs that introduce stop codons |