Detailed information of SNP:
|
SNP ID:
sf0216872877(Gbrowse)
Chromosome: chr02 Position: 16872877 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 72.52% | 27.48% |
| All Indica | 792 | 52.40% | 47.60% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 374 | 63.90% | 36.10% |
| Indica II | 210 | 47.14% | 52.86% |
| Indica Intermediate | 208 | 37.02% | 62.98% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216872877 | G->A | LOC_Os02g28520(LOC_Os02g28520.1) | INTRON |