Detailed information of SNP:



SNP ID: sf0216878353(Gbrowse)

Chromosome: chr02

Position: 16878353
Major allele: A

Minor allele: G

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of A(major allele)Frequency of G(minor allele)
All1416 76.27% 23.73%
All Indica796 73.62% 26.38%
All Japonica497 84.71% 15.29%
Aus67 46.27% 53.73%
Indica I374 64.71% 35.29%
Indica II213 87.32% 12.68%
Indica Intermediate209 75.60% 24.40%
Temperate Japonica335 98.81% 1.19%
Tropical Japonica94 31.91% 68.09%
Japonica Intermediate68 88.24% 11.76%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 66.67% 33.33%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0216878353 A->G INTERGENIC None