Detailed information of SNP:
|
SNP ID:
sf0216884085(Gbrowse)
Chromosome: chr02 Position: 16884085 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1413 | 52.94% | 47.06% |
| All Indica | 795 | 76.73% | 23.27% |
| All Japonica | 497 | 16.50% | 83.50% |
| Aus | 67 | 55.22% | 44.78% |
| Indica I | 372 | 72.58% | 27.42% |
| Indica II | 212 | 66.51% | 33.49% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 70.21% | 29.79% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 47.50% | 52.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216884085 | G->A | LOC_Os02g28550(LOC_Os02g28550.1) | INTRON |