Detailed information of SNP:
|
SNP ID:
sf0216890634(Gbrowse)
Chromosome: chr02 Position: 16890634 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 69.16% | 30.84% |
| All Indica | 798 | 97.74% | 2.26% |
| All Japonica | 496 | 17.14% | 82.86% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 99.73% | 0.27% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 334 | 2.10% | 97.90% |
| Tropical Japonica | 94 | 70.21% | 29.79% |
| Japonica Intermediate | 68 | 17.65% | 82.35% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216890634 | A->G | INTERGENIC | None |