Detailed information of SNP:
|
SNP ID:
sf0216890744(Gbrowse)
Chromosome: chr02 Position: 16890744 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 54.58% | 45.42% |
| All Indica | 798 | 27.82% | 72.18% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 67 | 55.22% | 44.78% |
| Indica I | 374 | 35.29% | 64.71% |
| Indica II | 213 | 16.90% | 83.10% |
| Indica Intermediate | 211 | 25.59% | 74.41% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216890744 | A->C | INTERGENIC | None |