Detailed information of SNP:
|
SNP ID:
sf0216897256(Gbrowse)
Chromosome: chr02 Position: 16897256 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1227 | 66.50% | 33.50% |
| All Indica | 798 | 73.06% | 26.94% |
| All Japonica | 310 | 53.55% | 46.45% |
| Aus | 67 | 44.78% | 55.22% |
| Indica I | 375 | 63.47% | 36.53% |
| Indica II | 212 | 87.74% | 12.26% |
| Indica Intermediate | 211 | 75.36% | 24.64% |
| Temperate Japonica | 185 | 62.70% | 37.30% |
| Tropical Japonica | 83 | 20.48% | 79.52% |
| Japonica Intermediate | 42 | 78.57% | 21.43% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 60.53% | 39.47% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216897256 | A->G | INTERGENIC | None |