Detailed information of SNP:
|
SNP ID:
sf0216903555(Gbrowse)
Chromosome: chr02 Position: 16903555 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 69.80% | 30.20% |
| All Indica | 799 | 98.87% | 1.13% |
| All Japonica | 495 | 17.17% | 82.83% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 334 | 2.10% | 97.90% |
| Tropical Japonica | 93 | 70.97% | 29.03% |
| Japonica Intermediate | 68 | 17.65% | 82.35% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216903555 | T->G | LOC_Os02g28570(LOC_Os02g28570.1) | INTRON |