Detailed information of SNP:
|
SNP ID:
sf0216910816(Gbrowse)
Chromosome: chr02 Position: 16910816 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 76.08% | 23.92% |
| All Indica | 793 | 73.77% | 26.23% |
| All Japonica | 497 | 84.31% | 15.69% |
| Aus | 67 | 44.78% | 55.22% |
| Indica I | 371 | 64.96% | 35.04% |
| Indica II | 211 | 87.68% | 12.32% |
| Indica Intermediate | 211 | 75.36% | 24.64% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 29.79% | 70.21% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216910816 | T->C | LOC_Os02g28580(LOC_Os02g28580.1) | INTRON |