Detailed information of SNP:
|
SNP ID:
sf0216924020(Gbrowse)
Chromosome: chr02 Position: 16924020 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 77.33% | 22.67% |
| All Indica | 796 | 74.62% | 25.38% |
| All Japonica | 497 | 84.10% | 15.90% |
| Aus | 67 | 61.19% | 38.81% |
| Indica I | 374 | 66.31% | 33.69% |
| Indica II | 212 | 88.68% | 11.32% |
| Indica Intermediate | 210 | 75.24% | 24.76% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 29.79% | 70.21% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216924020 | G->A | INTERGENIC | None |