Detailed information of SNP:
|
SNP ID:
sf0216950091(Gbrowse)
Chromosome: chr02 Position: 16950091 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 83.62% | 16.38% |
| All Indica | 798 | 79.07% | 20.93% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 65 | 44.62% | 55.38% |
| Indica I | 374 | 74.33% | 25.67% |
| Indica II | 213 | 71.83% | 28.17% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216950091 | A->G | INTERGENIC | None |