Detailed information of SNP:
|
SNP ID:
sf0216951275(Gbrowse)
Chromosome: chr02 Position: 16951275 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 84.00% | 16.00% |
| All Indica | 799 | 79.97% | 20.03% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 41.79% | 58.21% |
| Indica I | 375 | 74.93% | 25.07% |
| Indica II | 213 | 73.71% | 26.29% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216951275 | C->T | INTERGENIC | None |