Detailed information of SNP:



SNP ID: sf0216951553(Gbrowse)

Chromosome: chr02

Position: 16951553
Major allele: G

Minor allele: A

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1419 70.12% 29.88%
All Indica799 48.19% 51.81%
All Japonica497 99.20% 0.80%
Aus67 100.00% 0.00%
Indica I375 60.27% 39.73%
Indica II213 44.13% 55.87%
Indica Intermediate211 30.81% 69.19%
Temperate Japonica335 99.40% 0.60%
Tropical Japonica94 98.94% 1.06%
Japonica Intermediate68 98.53% 1.47%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 85.71% 14.29%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0216951553 G->A INTERGENIC None