Detailed information of SNP:
|
SNP ID:
sf0216957218(Gbrowse)
Chromosome: chr02 Position: 16957218 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 83.51% | 16.49% |
| All Indica | 799 | 79.22% | 20.78% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 41.79% | 58.21% |
| Indica I | 375 | 74.67% | 25.33% |
| Indica II | 213 | 71.83% | 28.17% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216957218 | C->G | LOC_Os02g28670(LOC_Os02g28670.1) | INTRON |