Detailed information of SNP:
|
SNP ID:
sf0216964278(Gbrowse)
Chromosome: chr02 Position: 16964278 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 65.02% | 34.98% |
| All Indica | 795 | 91.45% | 8.55% |
| All Japonica | 497 | 16.50% | 83.50% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 90.35% | 9.65% |
| Indica II | 211 | 90.05% | 9.95% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 69.15% | 30.85% |
| Japonica Intermediate | 68 | 16.18% | 83.82% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216964278 | C->T | LOC_Os02g28690(LOC_Os02g28690.1) | Non-Synonymous SNP |