Detailed information of SNP:
|
SNP ID:
sf0216965429(Gbrowse)
Chromosome: chr02 Position: 16965429 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1403 | 69.21% | 30.79% |
| All Indica | 785 | 46.88% | 53.12% |
| All Japonica | 497 | 98.39% | 1.61% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 366 | 58.20% | 41.80% |
| Indica II | 209 | 44.50% | 55.50% |
| Indica Intermediate | 210 | 29.52% | 70.48% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216965429 | G->A | LOC_Os02g28700(LOC_Os02g28700.1) | Non-Synonymous SNP |